rs240679929 SNP Detail

Summary

• ID
  rs240679929
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:192377596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gggagtatg tatgagtgtg agagtgtgtc
  tatgtaagtg tgtgagaggg tattgtgagt gtatgtgtgt gtgagtgtgt gtATATATGA
  GAGTATGTTA AACGGGTATg agtgagagag agagagagag agagagagag agagagagag
  W
  gCATGTGTGT CCATTTTAGG TTAACCTTGA ATGTCTTTTC TCATGCACCA TCCTTGTGGG
  TTTTGTTTTA CACTTAATTT ATTCATTtgc atgtatgtgt gtctgtgtat gtatatggag
  gtcagagagc aacttgcagg cgtcagtttt                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320199535	CHEV_1_194521482	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240679929					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192377596 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hhat	hedgehog acyltransferase			Intron
				Noncoding-Transcript-Variant
Rr426377	regulatory region 426377			1033 bp proximal