rs240680141 SNP Detail

Summary

• ID
  rs240680141
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:87001219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGACCACC AGCCCCCTTT
  TAAAAAAATA CCAAGATTAA TATTAAAAAG TAAAACACTC CATCTGCAGT CTGCCCTTTT
  TCCCTCTGCG TAGGTATCCG TTGTGTCTGA GCCACTCTCT CCAAGGAAAA TCTTGAGTTT
  GTAACTTCTG CTTTGGAATA GACTTTGGGG TGATCCTGGA AGATAGCGAG TACCACCCCG
  M
  CTTCCCCATT CCCACACCAG AAGGTGTGAG GCCTCAGTTT CTTTTCTCTT GGGTTAATTA
  ATTCAGGTGT TTCAAACACA TTTTATTAGA AAGATTTCCA GTCTTGTTTA ACATTGTATT
  TTAAAACTTT CTTTGTGGAG GGAGTGTGGG GATGGGGGCG GGGGTGGGGG GAGAGAAGAG
  GAGAAGAATT TTCTGCTGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323772677	CHEV_11_86923895	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240680141					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87001219 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi3483	CpG island 3483			191 bp distal
Gm73625	predicted gene, 73625			133 bp downstream
Prr11	proline rich 11			1685 bp upstream
Rr369312	regulatory region 369312			1453 bp downstream
Rr453746	regulatory region 453746			1696 bp distal
Rr453747	regulatory region 453747			871 bp distal
Rr453748	regulatory region 453748			within coordinates
Ska2	spindle and kinetochore associated complex subunit 2			Intron
				Noncoding-Transcript-Variant
Tssr103905	transcription start site region 103905			1198 bp downstream
Tssr103906	transcription start site region 103906			1154 bp downstream
Tssr103907	transcription start site region 103907			1119 bp downstream
Tssr103908	transcription start site region 103908			810 bp downstream
Tssr109946	transcription start site region 109946			1674 bp upstream
Tssr109947	transcription start site region 109947			1634 bp upstream
Tssr109948	transcription start site region 109948			1610 bp upstream