rs240685952 SNP Detail

Summary

• ID
  rs240685952
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84626542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTGCACAG CTCTCCATTT ACCCCTCACC GGCTAGGCGC
  CTTTCTGCAC AGCACGGCTG CAGAGTCCGT TCCGTTTTTT CTTGCCGCCC GTCGCACCCC
  M
  CCCCCCCCCA GCCCAACTAG GGGGATCTAG CGCGTCGCCT CCCTCTGCCC ACTTTTCCTT
  GGGGGAGGCG AGTGGAACTC CAGGCCAGGT TTCCGGGCC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	I/LnJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ
ss375388196	MGP_WTSI_8_86423812	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	C	A	A	A	A	C	A	A	A	C	A	C	A	C	A	A	C	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	I/LnJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ
rs240685952					SNP	A	A	A	C	A	A	A	A	C	A	A	A	C	A	C	A	C	A	A	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375388196	MGP_WTSI_8_86423812	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84626542 () rs orientation: forward

Symbol	Name	Function Class
Adgrl1	adhesion G protein-coupled receptor L1	192 bp upstream
Cpgi20662	CpG island 20662	within coordinates
Gm26721	predicted gene, 26721	186 bp upstream
Rr186961	regulatory region 186961	within coordinates
Tssr78300	transcription start site region 78300	45 bp upstream
Tssr78301	transcription start site region 78301	175 bp upstream
Tssr78302	transcription start site region 78302	183 bp upstream
Tssr78303	transcription start site region 78303	201 bp upstream
Tssr78304	transcription start site region 78304	534 bp upstream
Tssr78305	transcription start site region 78305	679 bp upstream
Tssr78306	transcription start site region 78306	707 bp upstream
Tssr78307	transcription start site region 78307	793 bp upstream