rs240694640 SNP Detail

Summary

• ID
  rs240694640
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24660244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGGTTGGG GGAGTCTCAG CGGTTCAGCA
  GGGCAGCGTT TTCTCTAGCT GCCCCCTCCC CCCAAACAta cacacacata cacacacaca
  cacacacaca cacacaccac caccaccacc accaccacca ccaccaccac caagaaggca
  K
  tgaAGGCTTG GTAGCCATTC TTGGGCCTCA TACTGCCTCC ATGTGGCAGA GAACAGAAGT
  GTGCCAACAG TCCCTTCCTG GGGGCTTGGC ACTCTAAGGA CCCTTGGCGA TAATTGCTTT
  TGCTAGAGCA AGCATCAGTG TAAACTCCCA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325331712	CHEV_17_24578215	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240694640					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24660244 () rs orientation: forward

Symbol	Name	Function Class
Dnase1l2	deoxyribonuclease 1-like 2	within coordinates
Eci1	enoyl-Coenzyme A delta isomerase 1	1954 bp downstream
Rr329768	regulatory region 329768	1644 bp distal
Rr329769	regulatory region 329769	within coordinates
Rr337043	regulatory region 337043	1341 bp distal
Rr340710	regulatory region 340710	within coordinates
Tssr146730	transcription start site region 146730	871 bp upstream
Tssr146731	transcription start site region 146731	887 bp downstream
Tssr146732	transcription start site region 146732	1807 bp downstream
Tssr146733	transcription start site region 146733	1823 bp downstream