rs240699001 SNP Detail

Summary

• ID
  rs240699001
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:93777589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCCTCCC CCTACTGGCC
  GTTAAACGTT CAGGGGTTCC CCTCCCCCCC TCAACCCCTG ACTTAGGGTT CTCTTAGGGA
  GAAAAAAAAA CATAAGAAAG TTTTTCCTCT GCTCCCTCCC AACCCCGTTC TGCTTGAAGG
  GAAAGATTAG ATAGGAGACT TTGCCTTTTT TAGCTGCCAA GGGTGGGAGA GTGGTTTCTC
  K
  GGGGTGTGGG GGCAGGAGCA TACAGAGTTT CGGGGCTTGG CTGGAGACGG AGCCCACCAT
  TGTAGAGCCA GCGCCGAGAG GCATTTTGCA CGTGGAGGTG CTGATACTGA AAGGGGGCGG
  GGTGGGCACG TGTGGGAGGG AGACGTAGGA GTGGTATCGG GGAGTCAGCC GCCAAGGCTG
  CTACTTGAGG GTTCCAAGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384313906	MGP_WTSI_11_93748077	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240699001					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384313906	MGP_WTSI_11_93748077	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:93777589 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbtd1	mbt domain containing 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr366736	regulatory region 366736			669 bp downstream
Rr454623	regulatory region 454623			1767 bp distal
Rr454624	regulatory region 454624			1317 bp distal
Rr454625	regulatory region 454625			534 bp distal
Rr454626	regulatory region 454626			within coordinates
Rr454627	regulatory region 454627			178 bp distal
Rr454628	regulatory region 454628			128 bp proximal
Rr454629	regulatory region 454629			1316 bp proximal
Tssr3641	transcription start site region 3641			886 bp downstream
Tssr104149	transcription start site region 104149			1622 bp downstream
Tssr104150	transcription start site region 104150			1474 bp downstream
Tssr104151	transcription start site region 104151			839 bp downstream
Tssr104152	transcription start site region 104152			609 bp downstream
Tssr104153	transcription start site region 104153			553 bp downstream
Tssr104154	transcription start site region 104154			529 bp downstream
Tssr104155	transcription start site region 104155			504 bp downstream
Tssr110107	transcription start site region 110107			1044 bp upstream
Tssr110108	transcription start site region 110108			1022 bp upstream
Tssr110109	transcription start site region 110109			990 bp upstream
Tssr110110	transcription start site region 110110			623 bp upstream
Tssr110111	transcription start site region 110111			251 bp upstream
Utp18	UTP18 small subunit processome component			997 bp upstream