rs240699946 SNP Detail

Summary

• ID
  rs240699946
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135352660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTCATTC ACTCTCATGC
  AAGAGCAGAT TGGTGAGATG AGTTTAAACT CAAGTAGCTT ATTAAAAGTG AGTTATTGAT
  CTGGAGGGCA GTGTGGAATC CAGAGTCAGG TAACTTAGAA AAATCCATCC CCCCTTGAAC
  TCAGTTTTCC AAACTGTCAA GCCCTTCCTT CCTTCCTTCT TTCCTTTCCT CTCTCCCTCT
  Y
  TCCTTCCTTC CCTCCTTCCT AACTTCTCCT TCCTTCCCTC CTTTGGTGCT TCTCTTTCTC
  TCCCAATCTC CTTCCTTCCT TCCTTCCTTC TTTCCTTCCT AACTTCCTAA TTTCCTTCCC
  TCCCTCCCCT TCTCCTTCCT TCTTTCCTTC TTTCCTTCTT TCCTTCTTTC CTTCTTTCCT
  TCTTTCCTTC TTTCCTTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363370992	MGP_WTSI_4_135181264	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	T	T	C	C	C	T	T	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240699946					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	T	T	C	C	C	T	T	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363370992	MGP_WTSI_4_135181264	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135352660 () rs orientation: forward

Symbol	Name	Function Class
1700029M20Rik	RIKEN cDNA 1700029M20 gene	1306 bp upstream
Cpgi15077	CpG island 15077	1431 bp proximal
Gm69371	predicted gene, 69371	within coordinates
Gm69375	predicted gene, 69375	within coordinates
Rr602082	regulatory region 602082	1175 bp distal
Tssr39623	transcription start site region 39623	1341 bp upstream
Tssr39624	transcription start site region 39624	1353 bp upstream
Tssr39625	transcription start site region 39625	1382 bp upstream
Tssr39626	transcription start site region 39626	1413 bp upstream
Tssr39627	transcription start site region 39627	1463 bp upstream