rs240700062 SNP Detail

Summary

• ID
  rs240700062
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:93295239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACAACTT ACCCGGTATA
  AATCATTGTT TGTTAGGGAG AAAGGCAAGT TGGATACATA AACTGTGCTT TTACTTGGCG
  CCAAGCCACC GCTCATTTCT AAAACGGAAA AAAAGGAGAC ATTGGGAATC TTACTCCAAG
  TAGAACCAAA CAAGGACCAT CACTGACTTA ATTAGGGTAG AATTCCTCAG GCTCCATTCA
  K
  TTAAAGAGAT TAGAGTACCA GTGTGGGTAG GGTGTGAATT ACCATATTCC TTTTCTAGCA
  GCGGGTGTTA AGCCTTTTAG GGCTGCGGTG CGATTGAAGA GGGGTTTTAG AGAGATGGAG
  AAGCCACAAG GCTATTTTTA ACGCCTTCTT AGGGTAAAAG CGGAAAAGAT GTTTCCCAAG
  GATTCGCCCA CCTCCGAAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395009296	MGP_WTSI_15_93227789	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240700062					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395009296	MGP_WTSI_15_93227789	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:93295239 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7581	CpG island 7581	499 bp proximal
Pphln1	periphilin 1	992 bp upstream
Rr312331	regulatory region 312331	within coordinates
Tssr132763	transcription start site region 132763	624 bp upstream
Tssr132764	transcription start site region 132764	640 bp upstream
Tssr132765	transcription start site region 132765	986 bp upstream
Tssr132766	transcription start site region 132766	1069 bp upstream
Tssr135972	transcription start site region 135972	834 bp downstream
Tssr135973	transcription start site region 135973	905 bp downstream
Tssr135974	transcription start site region 135974	987 bp downstream
Tssr135975	transcription start site region 135975	1261 bp downstream
Zcrb1	zinc finger CCHC-type and RNA binding motif 1	within coordinates