rs240704056 SNP Detail

Summary

• ID
  rs240704056
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127922071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGCTGTC TTTTCTGACT
  TGTGTATGTT TTACAGGTAG CGTTGGTATA TGGACAGATG AACGAACCAC CTGGCGCTCG
  AGCCCGGGTA GCTCTGACTG GTTTGACCGT TGCTGAATAC TTCAGAGACC AGGAGGGCCA
  AGATGTCCTG CTGTTTATTG ACAACATCTT CCGCTTTACC CAGGCTGGCT CAGAGGTAGG
  R
  GGGAAGCCTC GAGGCCTGGT TTGTTGAGCC AGTTGGGCAT ATTAGAAGAA AGATGTAGAC
  ACCTAAGACC ATTATTCTTT ACTTCTGTCT TTTAGGTGTC TGCCTTATTG GGCAGAATCC
  CTTCTGCTGT AGGCTACCAG CCCACCCTAG CCACCGACAT GGGCACAATG CAGGAAAGGA
  TCACCACCAC CAAGAAGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382197830	MGP_WTSI_10_127523258	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240704056					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382197830	MGP_WTSI_10_127523258	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127922071 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1b	ATP synthase F1 subunit beta	within coordinates
Gm55458	predicted gene, 55458	842 bp downstream
Mir677	microRNA 677	839 bp downstream
Rr441098	regulatory region 441098	267 bp proximal
Rr441099	regulatory region 441099	367 bp proximal
Snord59a	small nucleolar RNA, C/D box 59A	1986 bp downstream
Tssr96322	transcription start site region 96322	674 bp downstream
Tssr96323	transcription start site region 96323	105 bp downstream
Tssr96324	transcription start site region 96324	35 bp downstream
Tssr96325	transcription start site region 96325	90 bp upstream
Tssr96326	transcription start site region 96326	107 bp upstream
Tssr96327	transcription start site region 96327	123 bp upstream
Tssr96328	transcription start site region 96328	170 bp upstream