rs240705015 SNP Detail

Summary

• ID
  rs240705015
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:115149571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGCTTCTT GCCACAGACC
  TGGAAATCAT TCATCACCTT TAGCACTGAG GCGTCTTAGA AAATATATAA TGTGAGCACA
  ATTGTTTTGT GTGTTCTTTT GAGACAGGGT CTCACTGGGT AGCACTAGCT GGTCTGGAAC
  TTATTCTGCA GATCAAGTTG GCCTCCAACT CAAGAGATCT GCTTGCTCTG CCTCCCGAGT
  M
  CTGGGGTTCA GGACAGACAG GTGCCGCCAC CGCTGGACTC CACAGTGCCA TTTTTAGGCT
  GAAGAGCTAA ATTAATTTTC CAGTTAAGCT TTCAACTGCA AGACCTTTTT CTTTCCTCTT
  CCAGTGTAGA ACAAAGAGAA GTGTGAAATG GGTTGTTTAT TAATCTCCAG AGGCGGTGAA
  CCATACCGAC TCAAATCTAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484096	CHEV_10_114750722	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240705015					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115149571 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2204	CpG island 2204	1148 bp proximal
Gm10752	predicted gene 10752	1980 bp upstream
Gm67120	predicted gene, 67120	1963 bp upstream
Rab21	RAB21, member RAS oncogene family	Intron
Rr402237	regulatory region 402237	1798 bp upstream
Rr439191	regulatory region 439191	1574 bp distal
Rr439192	regulatory region 439192	392 bp distal
Rr439193	regulatory region 439193	1902 bp proximal
Rr439194	regulatory region 439194	1915 bp proximal
Rr439195	regulatory region 439195	1974 bp proximal
Tssr95806	transcription start site region 95806	1365 bp upstream
Tssr95807	transcription start site region 95807	1417 bp upstream
Tssr95808	transcription start site region 95808	1974 bp upstream
Tssr99318	transcription start site region 99318	1209 bp downstream
Tssr99319	transcription start site region 99319	1243 bp downstream
Tssr99320	transcription start site region 99320	1841 bp downstream
Tssr99321	transcription start site region 99321	1880 bp downstream
Tssr99322	transcription start site region 99322	1951 bp downstream