rs240705641 SNP Detail

Summary

• ID
  rs240705641
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25116820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCAACTAT TAGAATCTCA
  TAGCACACAC CTGAGAAGGA AGCAGAAGTT CGGTATTTTA ACACAAAGAG CTTCCTGGGT
  GTCTTGGAGA TGTTTGGGTC CCAAGCTGGG CAGTAAATAC AAACAACATA GCAAAAGCCC
  ACCAAGGACA GTGGCTGCCC ACAGCTGGCA GGGGAAGACA CTCTAGGTCT TTACTATGAA
  Y
  CAAGAGTTCC CCTGTGCCAG TAGGCAAAGG AGACCCAGTA TATCAAGAGG TCCTGGAACC
  TATAGCATGA GAGGGTGTGC ATAGAGCTGG CCAGAGGAGC AGAGAAGCAA GGCAGAACGG
  GCTGTGGGAG CATCGGGTGC CTGCCCTCCC AGCCCAGTCT GCAGCTGTTG GAGGCCGCAC
  AAGGAAGGCT CTGTTTACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353405098	MGP_WTSI_2_25082328	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240705641					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353405098	MGP_WTSI_2_25082328	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25116820 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11300	CpG island 11300	1534 bp distal
Gm75683	predicted gene, 75683	within coordinates
Gm75691	predicted gene, 75691	828 bp downstream
Rr372931	regulatory region 372931	1164 bp upstream
Rr553016	regulatory region 553016	1806 bp distal
Rr553017	regulatory region 553017	1010 bp distal
Rr553018	regulatory region 553018	1752 bp distal
Rr553019	regulatory region 553019	1322 bp proximal
Rr553020	regulatory region 553020	1690 bp proximal
Rr553021	regulatory region 553021	1731 bp proximal
Rr553022	regulatory region 553022	1900 bp proximal
Rr553023	regulatory region 553023	1999 bp proximal
Tssr16666	transcription start site region 16666	1737 bp downstream
Tssr16667	transcription start site region 16667	1433 bp downstream
Tssr16668	transcription start site region 16668	1377 bp downstream
Tssr22951	transcription start site region 22951	1612 bp downstream