rs240705974 SNP Detail

Summary

• ID
  rs240705974
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23718820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAACCATA ATTCTGGTAG
  GCTGAGGTAA TTCTTAGGCA ACTGCTTTGT CTTCCTCACG CAGAGAAATA TTGGATGTAG
  CATAAACATA GATTTACACG TTGCACAAAA CTTTTGGTCT TGCAGTCCTC TACATCTTCG
  TATTGCTCCG GAGAGGCAGC AGACATTCGG GGTTGGGAGA AAATACAAAG GGTCTTACGG
  R
  AATTGTTAGG CAAGTCTTTA CAAAGTCGCA AGATTCAGGA TACTTGACCT GTGGTTCCTG
  TTACATTACT GCTTGCTTTG TGTCACTTTA AACACTCCTG GAGCAAAGAC GTAGTTCGGC
  TTGAGTCAAG GAAAAAGGAC CTAGGTGCAT ATTTTACATA TAGCAAACCT GGTCTCTTTT
  TCTTCCTCCT TGGTTGCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387984369	MGP_WTSI_13_23626519	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240705974					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387984369	MGP_WTSI_13_23626519	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23718820 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5359	CpG island 5359	507 bp proximal
Gm55640	predicted gene, 55640	396 bp upstream
Gm60769	predicted gene, 60769	947 bp upstream
H2ac10	H2A clustered histone 10	346 bp downstream
H3c8	H3 clustered histone 8	768 bp upstream
Rr281120	regulatory region 281120	within coordinates
Rr403647	regulatory region 403647	708 bp downstream
Rr403648	regulatory region 403648	486 bp upstream
Tssr4007	transcription start site region 4007	945 bp upstream
Tssr118828	transcription start site region 118828	768 bp downstream
Tssr118829	transcription start site region 118829	761 bp upstream
Tssr121712	transcription start site region 121712	989 bp upstream
Tssr121713	transcription start site region 121713	515 bp downstream