About   Help   FAQ
rs240709966 SNP Detail
Summary
  • ID
    rs240709966
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr19:44385322 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AATGGATGGA GCCAACACCA
TGCGGATCCC TGGCAGATGT TCCCCAAGGG CTTCATCTGG AAATGCACCT CTTAGCAGCT
ACTTACAGAC ACTGCCCCTC AACCTCACTA GTTCCTGCCC AGCCACGAAA GAAACTGGCA
ACCCAGGCAA CACCTCGGGT CCTTCGATTA TTTTCTAAGT GAAATAGTTT CATGTTCCAA
R
TGAAGATTTT GCTTATATTT TCATAGTTTC ACACCATATC TGTCCCCGAC AAATGTCAGC
TGTTTAGTTA TCAGTTCTAG GCACATTGAA CACGAAGACT TTTTCCATGA AAAAATCTTC
AGTTACCAAA AGCTAAAACC CTCCCCTAGC ACAGACCCTG CATTAACCCC CTTCACTCTG
AAAATGATTT AATTATTCAA                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss402552110 MGP_WTSI_19_44471373 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240709966 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss402552110 MGP_WTSI_19_44471373 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:44385322 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D19Mit67 DNA segment, Chr 19, Massachusetts Institute of Technology 67 272 bp proximal
D19Mit67.2 DNA segment, Chr 19, Massachusetts Institute of Technology 67.2 122 bp proximal
D19Nds1 DNA segment, Chr 19, Nuffield Department of Surgery 1 230 bp proximal
Rr548237 regulatory region 548237 1465 bp distal
Rr548238 regulatory region 548238 within coordinates
Rr548239 regulatory region 548239 1831 bp proximal
Scd1 stearoyl-Coenzyme A desaturase 1 within coordinates
Tssr5524 transcription start site region 5524 519 bp upstream
Tssr156606 transcription start site region 156606 457 bp downstream
Tssr156607 transcription start site region 156607 136 bp downstream
Tssr156608 transcription start site region 156608 258 bp upstream
Tssr156609 transcription start site region 156609 468 bp upstream
Tssr159451 transcription start site region 159451 1932 bp upstream
Tssr159452 transcription start site region 159452 1638 bp upstream
Tssr159453 transcription start site region 159453 1569 bp upstream
Tssr159454 transcription start site region 159454 1550 bp upstream
Tssr159455 transcription start site region 159455 1244 bp upstream
Tssr159456 transcription start site region 159456 1125 bp upstream
Tssr159457 transcription start site region 159457 1096 bp upstream
Tssr159458 transcription start site region 159458 1062 bp upstream
Tssr159459 transcription start site region 159459 970 bp upstream
Tssr159460 transcription start site region 159460 934 bp upstream
Tssr159461 transcription start site region 159461 873 bp upstream
Tssr159462 transcription start site region 159462 841 bp upstream
Tssr159463 transcription start site region 159463 802 bp upstream
Tssr159464 transcription start site region 159464 772 bp upstream
Tssr159465 transcription start site region 159465 752 bp upstream
Tssr159466 transcription start site region 159466 734 bp upstream
Tssr159467 transcription start site region 159467 670 bp upstream
Tssr159468 transcription start site region 159468 424 bp upstream
Tssr159469 transcription start site region 159469 359 bp upstream
Tssr159470 transcription start site region 159470 345 bp upstream
Tssr159471 transcription start site region 159471 312 bp upstream
Tssr159472 transcription start site region 159472 286 bp upstream
Tssr159473 transcription start site region 159473 267 bp upstream
Tssr159474 transcription start site region 159474 245 bp upstream
Tssr159475 transcription start site region 159475 198 bp upstream
Tssr159476 transcription start site region 159476 180 bp upstream
Tssr159477 transcription start site region 159477 171 bp upstream
Tssr159478 transcription start site region 159478 150 bp upstream
Tssr159479 transcription start site region 159479 132 bp upstream
Tssr159480 transcription start site region 159480 100 bp upstream
Tssr159481 transcription start site region 159481 41 bp upstream
Tssr159482 transcription start site region 159482 36 bp downstream
Tssr159483 transcription start site region 159483 127 bp downstream
Tssr159484 transcription start site region 159484 161 bp downstream
Tssr159485 transcription start site region 159485 287 bp downstream
Tssr159486 transcription start site region 159486 294 bp downstream
Tssr159487 transcription start site region 159487 375 bp downstream
Tssr159488 transcription start site region 159488 392 bp downstream
Tssr159489 transcription start site region 159489 446 bp downstream
Tssr159490 transcription start site region 159490 548 bp downstream
Tssr159491 transcription start site region 159491 583 bp downstream
Tssr159492 transcription start site region 159492 634 bp downstream
Tssr159493 transcription start site region 159493 660 bp downstream
Tssr159494 transcription start site region 159494 680 bp downstream
Tssr159495 transcription start site region 159495 798 bp downstream
Tssr159496 transcription start site region 159496 868 bp downstream
Tssr159497 transcription start site region 159497 881 bp downstream
Tssr159498 transcription start site region 159498 893 bp downstream
Tssr159499 transcription start site region 159499 923 bp downstream
Tssr159500 transcription start site region 159500 954 bp downstream
Tssr159501 transcription start site region 159501 969 bp downstream
Tssr159502 transcription start site region 159502 1005 bp downstream
Tssr159503 transcription start site region 159503 1018 bp downstream
Tssr159504 transcription start site region 159504 1097 bp downstream
Tssr159505 transcription start site region 159505 1210 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory