rs240711215 SNP Detail

Summary

• ID
  rs240711215
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148891369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGT CTCTGGCTCC TGCTTCCGTC
  Y
  GCCAAGCATG GACAGAACCA CAAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321719746	CHEV_5_149766135	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240711215					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148891369 () rs orientation: forward

Symbol	Name	Function Class
1810059H22Rik	RIKEN cDNA 1810059H22 gene	within coordinates
Gm15406	predicted gene 15406	within coordinates
Gm15409	predicted gene 15409	1311 bp upstream
Gm15410	predicted gene 15410	1366 bp upstream
Gm50627	predicted gene, 50627	1363 bp upstream
Gm52833	predicted gene, 52833	1235 bp upstream
Rr625335	regulatory region 625335	1817 bp distal
Rr625336	regulatory region 625336	1902 bp distal
Rr625337	regulatory region 625337	1377 bp distal
Rr625338	regulatory region 625338	1072 bp distal
Rr625339	regulatory region 625339	717 bp distal
Rr625340	regulatory region 625340	within coordinates
Rr625341	regulatory region 625341	153 bp proximal
Rr625342	regulatory region 625342	1611 bp proximal
Tssr54595	transcription start site region 54595	1198 bp downstream