rs240717113 SNP Detail

Summary

• ID
  rs240717113
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142266484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGAGCAT GGTTTCGATT
  TCAGTTCCTT TTATCTCAAT TTGTGTTTGG GCGGCTGTTA CTTTGCCACT TCTAACAGTG
  GCTGCTCCAA GGAGCCTGGA GCAGTAGGAA GCTCAGGGAA AGAACTAAGT TGGCTGAGGA
  CTGTCCCTGT TACAGAGCCA GTGCCTGGGT GAGTAACCAC ATGTGTTTCT CTCAACAGAC
  S
  CTGCCGGCGA AATTGCCAGG ACATCTCCAT TCTGGGGTGG CAGACTCACC CTGGTGGGCA
  AGCCAGTGCA AGCTGCAGAC CTCACAGGGT CTTGTGGCCA TTTGCAGAGC GCCACCTGGC
  GGGCCAAGCG TGCATGTACT GCTTTTCTTG GGTCTTCATT CAATAACCCC TCTGGCTTGG
  GAGACAATGA CCAAGGCCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360023116	MGP_WTSI_3_142223687	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240717113					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360023116	MGP_WTSI_3_142223687	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142266484 () rs orientation: forward

Symbol	Name	Function Class
Gbp3	guanylate binding protein 3	within coordinates
Rr398085	regulatory region 398085	112 bp downstream
Rr586453	regulatory region 586453	302 bp distal
Rr586454	regulatory region 586454	within coordinates
Rr586455	regulatory region 586455	106 bp proximal
Tssr32157	transcription start site region 32157	618 bp downstream
Tssr32158	transcription start site region 32158	589 bp downstream
Tssr32159	transcription start site region 32159	557 bp downstream
Tssr32160	transcription start site region 32160	509 bp downstream
Tssr32161	transcription start site region 32161	369 bp downstream
Tssr32162	transcription start site region 32162	154 bp downstream
Tssr32163	transcription start site region 32163	121 bp downstream
Tssr32164	transcription start site region 32164	107 bp downstream
Tssr32165	transcription start site region 32165	95 bp downstream
Tssr32166	transcription start site region 32166	234 bp upstream
Tssr32167	transcription start site region 32167	961 bp upstream