rs240730446 SNP Detail

Summary

• ID
  rs240730446
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19488434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATTCTCTTT AAGGCAGAGT CAAGGGCTTA TAACAGGACT
  CTCAAGGGCT TGTTTGCACT TGTTGTTGCT AATTCACTAA AGATACACAA TTCTAGGGGA
  C
  GGAATATTAT AACTTCATCT TATAGAGTGA AGCTGTGCTT CAGGGAGTTT AGTACCTGAG
  GTCACTCGCC TTCATCACCT TTTCCTTTCT AGAATTCTG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324277954	CHEV_13_19396133	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240730446					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19488434 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc2	T cell receptor gamma, constant 2	796 bp downstream
Tssr118532	transcription start site region 118532	859 bp upstream
Tssr121559	transcription start site region 121559	114 bp downstream
Tssr121560	transcription start site region 121560	173 bp downstream
Tssr121561	transcription start site region 121561	724 bp downstream
Tssr121562	transcription start site region 121562	1897 bp downstream