rs240730819 SNP Detail

Summary

• ID
  rs240730819
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:120634980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTTAGTG AGCTGACCAG
  AGAGGTTGGG ATGAGGAGGA AGATGATGCA AGCTTTAAAC GGAGAGGTTT AAAAAATCTG
  AACTGTTCAG CAGTGAATTC TTGTAGCTAA TGAATGGATT GTGAGCCGTG GGGGTTCTAC
  CGGTTGGATG GGGTTGGATG GTCTTTTCAT TAGCTATTTG TACCACTTAA AGAAACATGC
  R
  TGGGTCAGCT GTTGAATTAA GAGGGAGGTA GTTTGCATTT GACCGTAAGT AGTTTGTGGT
  TAACCTTGCA GTCACAGAAG AGAAGCCTTT GAATTTAGAC AAACTTTGCG CTTTTTCTAA
  AAGCCTGAGT TTAGTATGTC TTGCTTTTAC AGAGAGATGT AAGGAATGAT TCCTTGTGTT
  ATTTGGACCT CACCTTTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372947423	MGP_WTSI_7_128179271	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240730819					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372947423	MGP_WTSI_7_128179271	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:120634980 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19654	CpG island 19654	209 bp distal
Gm9905	predicted gene 9905	661 bp upstream
Mettl9	methyltransferase like 9	within coordinates
Rr166622	regulatory region 166622	within coordinates
Rr400600	regulatory region 400600	1071 bp downstream
Tssr68813	transcription start site region 68813	1336 bp downstream
Tssr68814	transcription start site region 68814	1228 bp downstream
Tssr68815	transcription start site region 68815	1177 bp downstream
Tssr68816	transcription start site region 68816	1039 bp downstream
Tssr68817	transcription start site region 68817	992 bp downstream
Tssr68818	transcription start site region 68818	964 bp downstream
Tssr68819	transcription start site region 68819	191 bp downstream
Tssr68820	transcription start site region 68820	97 bp downstream
Tssr68821	transcription start site region 68821	909 bp upstream
Tssr74531	transcription start site region 74531	1307 bp upstream