rs240737188 SNP Detail

Summary

• ID
  rs240737188
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56428125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCTTGAG ATCCTGGAGG
  CTGAGGTTAG TGAACCATGG TGAAAAATAT CTCCCCTTCT TCCCGTCCCC GTGGCCACCA
  CCCTAAACTG TACCCACTGA GTCCTTCCTC ACCAGGACTG GAACAAGACG ATCCTCATGG
  TTTGTTTCCT GAGTCTATTT TTGTCTCCTT AGCAGGGTGG GTGGGTGGCA GAGCCAGTGA
  R
  CTCCTATTTA TTCTGCAAAG CCCCAGGAAC ACTATACCCT GGGTTTCATT CTCACAAAGC
  AGCCCCTGAT CCACAGCAAA ACTTACCTCT ATGACTCTTA AACTTCCTGG GTCTGACCCC
  CTACACACTT CCTCCCCTGC TACCACCTCT AACAGGTTAC CAGTTATTAA GTATTCCCAG
  TCCAAGTACC TAGTTACTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398551818	MGP_WTSI_17_56260548	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240737188					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398551818	MGP_WTSI_17_56260548	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56428125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9340	CpG island 9340	198 bp distal
Gm56918	predicted gene, 56918	48 bp downstream
Lrg1	leucine-rich alpha-2-glycoprotein 1	within coordinates
Rr340022	regulatory region 340022	within coordinates
Sema6b	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	1960 bp downstream
Tssr5174	transcription start site region 5174	910 bp downstream
Tssr5175	transcription start site region 5175	799 bp downstream
Tssr148750	transcription start site region 148750	994 bp upstream
Tssr148751	transcription start site region 148751	811 bp upstream
Tssr148752	transcription start site region 148752	759 bp upstream
Tssr148753	transcription start site region 148753	505 bp upstream
Tssr148754	transcription start site region 148754	444 bp upstream
Tssr148755	transcription start site region 148755	307 bp upstream
Tssr148756	transcription start site region 148756	277 bp upstream
Tssr148757	transcription start site region 148757	97 bp upstream
Tssr148758	transcription start site region 148758	62 bp upstream
Tssr148759	transcription start site region 148759	772 bp downstream
Tssr148760	transcription start site region 148760	826 bp downstream
Tssr148761	transcription start site region 148761	840 bp downstream
Tssr148762	transcription start site region 148762	869 bp downstream