rs240747324 SNP Detail

Summary

• ID
  rs240747324
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158100999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCGGTCC CATTCTTCCA
  TTGCAGGACT GGGTGGGTGG GACACAGCAC TCCTGCAGGT GAGGAGTCTC TAGCAAAGGC
  GCTCTAGTCC TCACTGAAGC CCTTCTTGGG GCCGCTTAGT GCTGCCTCCT GGTGGCAGAG
  AGAGGAACTG CAGAACTCAG GGCGATCCTA GTTCAGATCA GACCAGGTTG GGTGGGGGGG
  S
  GGGGCAGGTC CCAGGGGATC TGCTTTCCTA TCCCAGAACG CATGTTCCAG GCCATGCAGG
  CCATCGCAGG GATGCAAACA GATTCCCCCA TGAACGTCGA TGAGGATATG GTTGTGTTTA
  AATCCAGAGC TGGTGTGTGT GTGTGTGTGT GTGTGCGCGC GTGTGTACAT ACATGTCACA
  TGAGTGCATG GGTGACTGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SJL/J	SWR/J
ss356277798	MGP_WTSI_2_158084815	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	G	C	C	C	G	G	C	C	G	C	C	G	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SJL/J	SWR/J
rs240747324					SNP	C	C	C	C	C	C	C	G	C	C	C	G	G	C	C	G	C	C	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356277798	MGP_WTSI_2_158084815	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158100999 () rs orientation: forward

Symbol	Name	Function Class
Bpi	bactericidal permeablility increasing protein	within coordinates
Cpgi12591	CpG island 12591	897 bp distal
Gm34571	predicted gene, 34571	1035 bp upstream
Rr568712	regulatory region 568712	1789 bp distal
Rr568713	regulatory region 568713	975 bp distal
Rr568714	regulatory region 568714	326 bp distal
Rr568715	regulatory region 568715	61 bp distal
Tssr727	transcription start site region 727	860 bp downstream
Tssr21302	transcription start site region 21302	970 bp downstream
Tssr21303	transcription start site region 21303	870 bp downstream
Tssr21304	transcription start site region 21304	847 bp downstream
Tssr21305	transcription start site region 21305	833 bp downstream
Tssr21306	transcription start site region 21306	803 bp downstream
Tssr27222	transcription start site region 27222	116 bp upstream