rs240749006 SNP Detail

Summary

• ID
  rs240749006
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80076726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGCCAAAA ATGGGACTAC TAGGTAGTGT AGCAGCTGCT
  TGGGGATCTC CTCTAGGCTT CTAAAGTCTC ATCTGTGGTC AACCACACAG ATCTCATTCC
  T
  CCCCCCCCCC CCCCCCGTGG AAGGAGAGCT TCTATACCAC ACTACCCCGT GGAGCTGTGG
  GTACTGAGCT GTGTTTAAAG GAGGCAGCAC AGGTTCTCA                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	NZO/HlLtJ	PWK/PhJ	RF/J	RIIIS/J	SM/J	ST/bJ	WSB/EiJ
ss394694043	MGP_WTSI_15_80022955	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	NZO/HlLtJ	PWK/PhJ	RF/J	RIIIS/J	SM/J	ST/bJ	WSB/EiJ
rs240749006					SNP	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394694043	MGP_WTSI_15_80022955	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80076726 () rs orientation: forward

Symbol	Name	Function Class
Gm63613	predicted gene, 63613	within coordinates
Mgat3	mannoside acetylglucosaminyltransferase 3	within coordinates
Rr505908	regulatory region 505908	380 bp distal
Rr505909	regulatory region 505909	within coordinates
Rr505910	regulatory region 505910	488 bp proximal
Tssr4660	transcription start site region 4660	585 bp upstream
Tssr132185	transcription start site region 132185	647 bp downstream
Tssr132186	transcription start site region 132186	343 bp downstream
Tssr132187	transcription start site region 132187	475 bp upstream
Tssr132188	transcription start site region 132188	528 bp upstream
Tssr132189	transcription start site region 132189	548 bp upstream