rs240749692 SNP Detail

Summary

• ID
  rs240749692
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157402883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGGGAAA GGGAGGAAAT
  AGAGAAAACG CGCATTGCAG GAAAAATAAG CCAGACAAAG GCACTTACTA GGAGAAAAAT
  GGATTAGATA AAAGTGCATT GGAAAAGAAA CAAAGAAACG AAAAAAAAAA AAAAAAAAAC
  CGAATTGGAA ACACACTAGA GAAAAAAATG CCCCTTGCAG GACAAAAACG GAAGGGGAAA
  S
  AACATTTTCA AAAAAAAAAA AAAAAGAAAG AAAGAAAGAA AAAGAAAAAA GAAAGAAAGA
  AAGAAAGAAA GGGGCAAATC ATTTTATGGA AAAAGAGAGT GCGCGATATC GCGCGCAAAA
  GTGCTTCTCT TAAAGCCAAA CTGGAAGAAA GCGCTTTGTG CAAAAAAAAA CTATCTACCC
  CAAGAGCTCC CTTTGCAGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss356262043	MGP_WTSI_2_157386699	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs240749692					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356262043	MGP_WTSI_2_157386699	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157402883 () rs orientation: forward

Symbol	Name	Function Class
Blcap	bladder cancer associated protein	within coordinates
Cpgi12575	CpG island 12575	369 bp distal
Cpgi12576	CpG island 12576	497 bp proximal
Gm56190	predicted gene, 56190	1398 bp downstream
Nnat	neuronatin	within coordinates
Rr568543	regulatory region 568543	823 bp distal
Rr568544	regulatory region 568544	1384 bp proximal
Tssr721	transcription start site region 721	1478 bp downstream
Tssr21268	transcription start site region 21268	844 bp downstream
Tssr21269	transcription start site region 21269	359 bp downstream
Tssr21270	transcription start site region 21270	288 bp downstream
Tssr21271	transcription start site region 21271	174 bp downstream
Tssr21272	transcription start site region 21272	135 bp downstream
Tssr21273	transcription start site region 21273	512 bp upstream
Tssr21274	transcription start site region 21274	754 bp upstream
Tssr21275	transcription start site region 21275	809 bp upstream
Tssr21276	transcription start site region 21276	910 bp upstream
Tssr21277	transcription start site region 21277	939 bp upstream
Tssr21278	transcription start site region 21278	974 bp upstream
Tssr21279	transcription start site region 21279	1066 bp upstream
Tssr21280	transcription start site region 21280	1145 bp upstream
Tssr21281	transcription start site region 21281	1192 bp upstream
Tssr21282	transcription start site region 21282	1317 bp upstream
Tssr21283	transcription start site region 21283	1331 bp upstream
Tssr27183	transcription start site region 27183	80 bp upstream
Tssr27184	transcription start site region 27184	6 bp downstream
Tssr27185	transcription start site region 27185	889 bp downstream
Tssr27186	transcription start site region 27186	1016 bp downstream