rs240752840 SNP Detail

Summary

• ID
  rs240752840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72439282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTCTCAC CTGCTCCAGC
  TCAGTCCGGT GGCTGAGAGA GGAAGCAGTC CTGACTAGTA GAGGGGAAAC GCTCGCGAGC
  GTGTAGTGGG GGCGGGAGGG CGTGTAGATT CGTTTCACCT TACACACTAG GAAGCGATCA
  ATTCTCCCTT CCACGCCGCA CGGTGGCACA GGTCCACTCC CTGCCGCCGT CACGCGAGCC
  Y
  GCTCCCCGCC CCCAACACGC CCCCCCAACC CCCTCGGCCG CCGCAGCCAC CCGACCGCTC
  CCTCGGGGCC CCCGCCGCGG CTTCCTGGGC CCGCGGCCCG TAGCCGCTCC GCTCCGCCCC
  GCGCGCTCCG CGCCCCCCTG CGGCCCCCGC GCCGCGCCCG CACACGCGCG TCCACGCCCC
  CCGGCCGCGC GGTAGGTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378020713	MGP_WTSI_9_72379807	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240752840					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378020713	MGP_WTSI_9_72379807	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72439282 () rs orientation: forward

Symbol	Name	Function Class
4930509E16Rik	RIKEN cDNA 4930509E16 gene	142 bp upstream
Cpgi22017	CpG island 22017	within coordinates
Rfx7	regulatory factor X, 7	240 bp upstream
Rr401508	regulatory region 401508	1342 bp downstream
Rr401509	regulatory region 401509	80 bp downstream
Rr682766	regulatory region 682766	1524 bp distal
Rr682767	regulatory region 682767	1579 bp distal
Rr682768	regulatory region 682768	1023 bp distal
Rr682769	regulatory region 682769	829 bp distal
Rr682770	regulatory region 682770	within coordinates
Rr682771	regulatory region 682771	28 bp distal
Tssr86008	transcription start site region 86008	243 bp downstream
Tssr86009	transcription start site region 86009	50 bp downstream
Tssr86010	transcription start site region 86010	184 bp upstream
Tssr86011	transcription start site region 86011	214 bp upstream
Tssr86012	transcription start site region 86012	787 bp upstream