rs240761813 SNP Detail

Summary

• ID
  rs240761813
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:87001739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AATAGGTGG AGATATTTTT ACTTGTTAGA
  GGCTAATTCT GTGTTTTTAA CGGGTTGCTT TTTGTAATTG GTGGATCAAG TTCTGAGCTT
  TATCTAACCC TTCCATTGCA ATCAATTCTC AAACTTTTAA AAAATATTGA GCAAATTATC
  Y
  TAAAGAAAAT ACAAGTTAAA CATCCTGTTA AAGGTAAGTT TTAGGAAGTT ATGAGGTTGT
  TGAACTTTAA CATATTTTAG ATACTGTATA AATTATGGTC TAGCTTTAAC ATTTCTTTTT
  TCAGAGGATC AAAGGAAAAC AGCTTTTCCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323772680	CHEV_11_86924415	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240761813					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87001739 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi3483	CpG island 3483			711 bp distal
Gm73625	predicted gene, 73625			653 bp downstream
Rr369312	regulatory region 369312			1973 bp downstream
Rr453747	regulatory region 453747			1391 bp distal
Rr453748	regulatory region 453748			403 bp distal
Ska2	spindle and kinetochore associated complex subunit 2			Intron
				Noncoding-Transcript-Variant
Tssr103905	transcription start site region 103905			1718 bp downstream
Tssr103906	transcription start site region 103906			1674 bp downstream
Tssr103907	transcription start site region 103907			1639 bp downstream
Tssr103908	transcription start site region 103908			1330 bp downstream