rs240768937 SNP Detail

Summary

• ID
  rs240768937
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72181581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGTTTAT GTGTATCTGT
  GTTTTTTTGT CTGTATATAT GCCTGTGTGC CACTTTAGTG TCTGGTGCCT ACCGAGGCCA
  GAAGAGGGCA TCAGATCCCC TGAACTGTAG TTGTGTGCCA CCATGGGGTG CTGCGAACCA
  AATTAGGGCA CTCTAGAAAA GCAACATGGG CTCTTACTCA TTTTACATCT CTCCAGCCCT
  Y
  GTTTTATTGC CTCTTTCTTT CTTCCTTCCT TCCTTTCTTT TTTTTTTTTT TAACAAAATC
  TGACATCGTT CAAACACACA AATGTCCATC TACATTTCGG ACATAACATG GTGTCTGTTT
  CCTTACAGAT CCGACTTACG ATGAAGTATT CTTATAAATA CATCGGCCAT TTTTTTCCAC
  CTCCAATTAC GGATTACTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378015292	MGP_WTSI_9_72122106	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240768937					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378015292	MGP_WTSI_9_72122106	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72181581 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22014	CpG island 22014	216 bp proximal
Gm27253	predicted gene 27253	within coordinates
Rr197186	regulatory region 197186	within coordinates
Rr206702	regulatory region 206702	219 bp proximal
Rr368823	regulatory region 368823	1056 bp upstream
Tssr85968	transcription start site region 85968	574 bp upstream
Tssr85969	transcription start site region 85969	602 bp upstream
Tssr85970	transcription start site region 85970	642 bp upstream
Tssr85971	transcription start site region 85971	667 bp upstream
Tssr85972	transcription start site region 85972	720 bp upstream
Tssr85973	transcription start site region 85973	1188 bp upstream
Zfp280d	zinc finger protein 280D	561 bp upstream