rs240769829 SNP Detail

Summary

• ID
  rs240769829
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123258058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAAATATG GAGATAAAGT
  GCAGAGCAGA GACTGAAGGA AAGGCCATTC AGTGACTGCC TCACCTGGGG ATCCACCTCA
  TATACAGTCA CCAAACCTAT ACACTATTGT GGATGCCAAG AAGTGCATGC TGAAAGGAGC
  CTGATATGCC TGTTTCCTGA GAGGCCCTGC CAGAGCCTTA CAAATACAGA GGCAGATGTT
  Y
  GAAGCAAACC ATTGGACTGA GCACGGGGTC CCCAAAAAAG GACTTAGAGA AAGGACTGAA
  GGAGTTGAAG GGGTTTGCAA CCCCATAGGA AGAACAATAT CAACCAAACA GACCCTCCAG
  AACTCTCAGG GTCTAAGCCA TCAACAAAGG AGTACACATG GCTCCAGCTG CATGTGTAGC
  AGAGGATGGC CTTGTCATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369922338	MGP_WTSI_6_123231117	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240769829					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369922338	MGP_WTSI_6_123231117	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123258058 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	690 bp downstream
Tssr58808	transcription start site region 58808	1631 bp upstream
Tssr63019	transcription start site region 63019	429 bp downstream
Tssr63020	transcription start site region 63020	1394 bp downstream
Tssr63021	transcription start site region 63021	1480 bp downstream
Tssr63022	transcription start site region 63022	1515 bp downstream
Tssr63023	transcription start site region 63023	1543 bp downstream
Tssr63024	transcription start site region 63024	1646 bp downstream
Tssr63025	transcription start site region 63025	1699 bp downstream
Tssr63026	transcription start site region 63026	1710 bp downstream
Tssr63027	transcription start site region 63027	1759 bp downstream
Tssr63028	transcription start site region 63028	1772 bp downstream
Tssr63029	transcription start site region 63029	1803 bp downstream
Tssr63030	transcription start site region 63030	1833 bp downstream
Tssr63031	transcription start site region 63031	1890 bp downstream
Tssr63032	transcription start site region 63032	1914 bp downstream
Tssr63033	transcription start site region 63033	1939 bp downstream
Tssr63034	transcription start site region 63034	1958 bp downstream
Tssr63035	transcription start site region 63035	1979 bp downstream