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rs240770375 SNP Detail
Summary
  • ID
    rs240770375
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:122826783 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGGTCCCATG GGCCAGAGAT
TCTGAGTCAA CACATCTGGG ATGGGGCTTG AAATTTTGCA TCTTTAATGT TTTCAAATGA
TGCTGATGTC AATAAGAGAC CTTTCTCTGA GAGTCGCCAA ATTGTCTAAA GTGTCCTGCT
CACATGTCAT CCATCACTGT TCACCTGAGA ACTCTGCTTA GGTTCCCAGG GCCACATCTT
Y
ACACATCTGT ACTCATATTG TTTCTTTTTG AAGAGGCTTT GTCTTGGGTA CAGTTGGTAG
AGTGCGTGAG CTCTTCGCTG AAGGCTGCTT CCAGAATGCC CTTTATAGAC TGTCTTGCTT
TCTTCCTAAA GTCTTTCCCC AAGAGGGCAT ACAGGAAAGG GTTGAAGCAA CTATTGGCAG
ATGCTAAAGC AATGGACATG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss369914778 MGP_WTSI_6_122799842 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240770375 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss369914778 MGP_WTSI_6_122799842 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:122826783 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
C3ar1 complement component 3a receptor 1 within coordinates
Tssr58709 transcription start site region 58709 1848 bp downstream
Tssr58710 transcription start site region 58710 1628 bp downstream
Tssr58711 transcription start site region 58711 633 bp upstream
Tssr58712 transcription start site region 58712 751 bp upstream
Tssr58713 transcription start site region 58713 807 bp upstream
Tssr62967 transcription start site region 62967 1993 bp upstream
Tssr62968 transcription start site region 62968 1945 bp upstream
Tssr62969 transcription start site region 62969 1625 bp upstream
Tssr62970 transcription start site region 62970 1605 bp upstream
Tssr62971 transcription start site region 62971 1545 bp upstream
Tssr62972 transcription start site region 62972 1445 bp upstream
Tssr62973 transcription start site region 62973 1384 bp upstream
Tssr62974 transcription start site region 62974 1298 bp upstream
Tssr62975 transcription start site region 62975 1213 bp upstream
Tssr62976 transcription start site region 62976 1124 bp upstream
Tssr62977 transcription start site region 62977 1066 bp upstream
Tssr62978 transcription start site region 62978 1012 bp upstream
Tssr62979 transcription start site region 62979 979 bp upstream
Tssr62980 transcription start site region 62980 963 bp upstream
Tssr62981 transcription start site region 62981 944 bp upstream
Tssr62982 transcription start site region 62982 785 bp upstream
Tssr62983 transcription start site region 62983 327 bp upstream
Tssr62984 transcription start site region 62984 231 bp upstream
Tssr62985 transcription start site region 62985 192 bp upstream
Tssr62986 transcription start site region 62986 86 bp downstream
Tssr62987 transcription start site region 62987 216 bp downstream
Tssr62988 transcription start site region 62988 284 bp downstream
Tssr62989 transcription start site region 62989 443 bp downstream
Tssr62990 transcription start site region 62990 489 bp downstream
Tssr62991 transcription start site region 62991 516 bp downstream
Tssr62992 transcription start site region 62992 541 bp downstream
Tssr62993 transcription start site region 62993 635 bp downstream
Tssr62994 transcription start site region 62994 741 bp downstream
Tssr62995 transcription start site region 62995 858 bp downstream
Tssr62996 transcription start site region 62996 918 bp downstream
Tssr62997 transcription start site region 62997 1060 bp downstream
Tssr62998 transcription start site region 62998 1115 bp downstream
Tssr62999 transcription start site region 62999 1186 bp downstream
Tssr63000 transcription start site region 63000 1243 bp downstream
Tssr63001 transcription start site region 63001 1266 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory