rs240779305 SNP Detail

Summary

• ID
  rs240779305
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:59952578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTAAATGTA ACATTTATAG TGATCCCCTC
  CTTTCCtata aaagcaatag gtgttcattg tagaaaattt tgaagatgga ggaagggagg
  aaaaaaagat gctaaatgct ctctgcatcc ctgccctgca gaggaaacat cttgttaacg
  Y
  tctgatAGAA ATAATTTCTC TCTTAGTCTG TCTGTCTGTC TGTGAATGCA AGCTGCTCTG
  GTAGTAAATA GGACACATAT TTAAGAAGCC ACTCGCCATC TACCCTGGGG AGGGTGAATG
  CAAAGCCAAG ACAGGGCTCT ACAGGGGTTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323323890	CHEV_10_59579504	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240779305					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:59952578 () rs orientation: forward

Symbol	Name	Function Class
Gm51801	predicted gene, 51801	within coordinates
Gm66809	predicted gene, 66809	985 bp upstream
Rr219869	regulatory region 219869	1423 bp proximal
Spock2	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	within coordinates
Tssr93522	transcription start site region 93522	964 bp downstream