rs240786323 SNP Detail

Summary

• ID
  rs240786323
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58422147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTGGCGCC CGCCGTGGCC GGCCGGCGCG CGGGACTTCT
  TTGCCGAGGG TCGCAGCGCG GCGGACGCTG ACGCCGAGGA GAGGTCCGCG GGGGACGGAC
  Y
  GCGGAGGACC AGAACCACCT GCTGGAGGAG CCGCGCTACG GGGGCCGCGC AGGGTCCAAA
  CGGCTCGCGT AGGCGGCGGC TCCGCGGTCC TCGGGGTCG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss388759169	MGP_WTSI_13_58375694	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	C	C	T	T	T	T	T	T	C	C	T	T	C	C	T	C	C	C	C	C	C	C	T	T	T	T	T	C	C	T	T	C	C	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs240786323					SNP	T	T	T	T	T	T	C	C	T	T	T	T	T	T	C	C	T	T	C	C	T	C	C	C	C	C	C	C	T	T	T	T	T	C	C	T	T	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388759169	MGP_WTSI_13_58375694	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58422147 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5724	CpG island 5724	within coordinates
Gkap1	G kinase anchoring protein 1	within coordinates
Rr481008	regulatory region 481008	156 bp distal
Rr481009	regulatory region 481009	within coordinates
Tssr120072	transcription start site region 120072	53 bp downstream
Tssr122823	transcription start site region 122823	218 bp upstream
Tssr122824	transcription start site region 122824	126 bp upstream
Tssr122825	transcription start site region 122825	within coordinates
Tssr122826	transcription start site region 122826	7 bp downstream
Tssr122827	transcription start site region 122827	34 bp downstream
Tssr122828	transcription start site region 122828	128 bp downstream
Tssr122829	transcription start site region 122829	171 bp downstream
Tssr122830	transcription start site region 122830	500 bp downstream
Tssr122831	transcription start site region 122831	1314 bp downstream
Tssr122832	transcription start site region 122832	1367 bp downstream