rs240791649 SNP Detail

Summary

• ID
  rs240791649
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:135644805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAA AGTTCACCTT CATTTAGGTC
  Y
  TTTCCCTCTG TTGCGGTTCA CCCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325980197	CHEV_X_133278595	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240791649					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:135644805 () rs orientation: forward

Symbol	Name	Function Class
BC065397	cDNA sequence BC065397	within coordinates
Cpgi22954	CpG island 22954	1811 bp distal
Morf4l2	mortality factor 4 like 2	370 bp upstream
Rr406171	regulatory region 406171	701 bp upstream
Tssr164192	transcription start site region 164192	1980 bp upstream
Tssr164193	transcription start site region 164193	911 bp upstream
Tssr164194	transcription start site region 164194	364 bp upstream