rs240793703 SNP Detail

Summary

• ID
  rs240793703
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:82070980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATACATGA AAGAGCAGAA
  GACAGGGATG AGTTCATCTC TCCTATGATG GGCACTAGGT GGCCCCTTTT ATAGGTGTAC
  ATCTACATTT AGAGGACTTG TTCGCACAGA AATTTTCTTA GTGAGTTCTG GAATCAGAAT
  GTTATCAATC TGACTTGGTT CAGAGACTCA GCAAGAGAGT GGCTGCCTGA TGCTGTGTTA
  R
  AGGTAGAGTT AGGAGAGGTT TGGACAAGTG GGTACTGTCA GCTTACTCGG TGTGGGAGGA
  AATACATTAG CTCATGTTCT TTGGGATATA CTCCAGGGAA ACATTGACAT GAAATCACAG
  TAATTGATCA GTGCCTCTGG GCTCAGCACA TGGGCCTTAA ACTCAAACCT GTAGGAGTTG
  CACTAAGTTA AAATGCTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375326064	MGP_WTSI_8_83868250	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240793703					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375326064	MGP_WTSI_8_83868250	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:82070980 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20635	CpG island 20635	1318 bp distal
Gm51582	predicted gene, 51582	1688 bp upstream
Inpp4b	inositol polyphosphate-4-phosphatase, type II	within coordinates
Rr666048	regulatory region 666048	1779 bp distal
Rr666049	regulatory region 666049	398 bp distal
Tssr78167	transcription start site region 78167	1841 bp downstream
Tssr78168	transcription start site region 78168	1806 bp downstream
Tssr78169	transcription start site region 78169	1776 bp downstream
Tssr78170	transcription start site region 78170	1734 bp downstream
Tssr78171	transcription start site region 78171	1633 bp downstream