rs240798254 SNP Detail

Summary

• ID
  rs240798254
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99944332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCACCTC TGTCGCCTGC
  AACCTACTCC AGGAGATATC TGGTTTCCCC GCTGACTGTC CTGCAGAAGG TGACATGGAA
  CAATTCATCA GGATGGAGCG TTCAGGCAGA CTGGCTGGTG AGTAAGCACA AAGCTGACAT
  CCCGTGTCTC TTGCACTGTA TCAACTAGCT GGAGTAGATT TGCCTCTTGA AAAAATAAGA
  R
  AAATGAGGCC CCAGGCATAA CCATGCCCTG TGATTTACTC AGGCTAGCAG TAGACTTAAG
  TGATTTCTTG GACTACTTGC ATGCTTTAAT CCCCCTAAGA AGAAACTGAG ATCTTCATGG
  ACCCTCAAAC CTGCCTTTCT TTATCTGGTT TGATTTAATT CAAAAATACA TTCACTAGGC
  TTTAGAACAG AACCAAGTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323830636	CHEV_11_99914820	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240798254					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99944332 () rs orientation: forward

Symbol	Name	Function Class
Gm11571	predicted gene 11571	within coordinates
Tssr104894	transcription start site region 104894	1391 bp downstream
Tssr104895	transcription start site region 104895	1241 bp downstream
Tssr104896	transcription start site region 104896	1214 bp downstream