rs240799299 SNP Detail

Summary

• ID
  rs240799299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:55420335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTAGTATT CTTACCTCCA GGTAGGTAAT
  AAGAAAGACC AAGAAAGGCT GGAAGGTTTG CAATGTGCCA CCCAGGGCGA GGGACACAGG
  ACACAGAACA CCTGCAAGGG CAGATGAACA GGTGTAAGTC GCTTGGGGAG GAGCAGGGCT
  Y
  TGCAGCTTCA GACTTGTGTG TGGAAGGGTT CATTCTCGTG GTTGGCACAG CTCATCAAGA
  CACACACCCT CCAGTTCCTG TTGTAGCTGA GTGGTCATGT CCTCGCTGCT CTGCTCAAAG
  TCAAAAGACC TTAAAGTCCT CAGCAATGCG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319728284	CHEV_1_55438020	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240799299					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:55420335 () rs orientation: forward

Symbol	Name	Function Class
Cpgi265	CpG island 265	597 bp proximal
Gm8531	predicted gene 8531	19 bp downstream
Rr16609	regulatory region 16609	1866 bp proximal
Rr33932	regulatory region 33932	1873 bp proximal