rs240804749 SNP Detail

Summary

• ID
  rs240804749
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164116652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTATAAA ACTCTTTTCC
  AAACCCTCAT TGCATTAAAA TGGAAACTAC CACTCATTTT TAATCAATAC ATTCTCCTAA
  TATGTTCAAT TCTGAACAAA AGTCTCCTCC ATTTATTAAC TGTGCCCCCT AGAGAAGTCA
  TATACTCTTA GGGCACACCT ACAGCAAGTG CAAGACAGGA GCAGCCATTC TAATGGGAAA
  Y
  ATTAGAGGAA CGTGTGTGCT CATGATCTCC AACATGTCTA GATCTCAAAC TTCTGCTCTG
  AAGTTGTGAA AAAAGTCTTT CCTTCAGGGC TCTGTTTGCC CAATGCATCA AGGTATTGAC
  CCAAGCATTG GGGTAGAGGC CCAATCCTCT TACCTAACAG CAGAGAAAGA TTTGATTTAT
  GTAATAAAAA GATGAGTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356428025	MGP_WTSI_2_164100468	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240804749					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356428025	MGP_WTSI_2_164100468	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164116652 () rs orientation: forward

Symbol	Name	Function Class
Svs4	seminal vesicle secretory protein 4	1224 bp downstream
Tssr21549	transcription start site region 21549	1220 bp upstream
Tssr21550	transcription start site region 21550	1326 bp upstream
Tssr27409	transcription start site region 27409	1246 bp downstream
Tssr27410	transcription start site region 27410	1269 bp downstream
Tssr27411	transcription start site region 27411	1306 bp downstream
Tssr27412	transcription start site region 27412	1344 bp downstream
Tssr27413	transcription start site region 27413	1351 bp downstream
Tssr27414	transcription start site region 27414	1369 bp downstream
Tssr27415	transcription start site region 27415	1385 bp downstream