rs240805271 SNP Detail

Summary

• ID
  rs240805271
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29735295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAAAAGA TTGGTAGGGC
  TGGGGAATTG GGCAGGAATG GAGTGAAAAC TCTTGCCTGC TTTAGGCATC CCCCTGCCAC
  CCTAAACTGA GAGAAATGTC CTCTCCTAAA AGTCACGTCA AACAACCTTA GGACCAACTA
  AAGATTCAGT CAAGTGCCTC TGGGACACAA CTTGCACGCA TCCCCCCCCC CCCCCCCCCC
  S
  GCGAGGGTCT TCTGTAGGGT GAAGGTTCCC GAATACCCCC ACCCCAGCCC CTTCGGGCAT
  TTAGGCCGCC AAAGCTGGGG CTCCTCCTCT CCAGCGTCTG ACTCTCCCCT TGCTTTTCTT
  CGCTCGGGCC CTCCCCCAGC CTCCGCGGAT GGGGGGGCCG GGCTTGGCTC CGCGAGGCCC
  GTGCATTCCA GAGAGCAGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321775195	CHEV_6_29685296	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240805271					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29735295 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17242	CpG island 17242	43 bp proximal
Rr627623	regulatory region 627623	within coordinates
Smo	smoothened, frizzled class receptor	207 bp upstream
Tssr55287	transcription start site region 55287	175 bp upstream
Tssr55288	transcription start site region 55288	315 bp upstream
Tssr55289	transcription start site region 55289	335 bp upstream
Tssr55290	transcription start site region 55290	371 bp upstream
Tssr55291	transcription start site region 55291	829 bp upstream