rs240806564 SNP Detail

Summary

• ID
  rs240806564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:32405193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTCGGTA TTCTCCGCCC
  CCTCGGTGCA TGCAGCCAAT CAGAGCGCGG CCCCGCCCCT CGAGGCCGTT CCAGCGGGCC
  GGCCGAGTGC AAGCCGAGCC CGGCTGAGGG TGGCGCCGCG GGCGGGGGCG ATGGGGCCTG
  GCAGCCGGGT GGCGGCGGCG GCAGTGGTGG GGCTTGCCTA GACGCGGGGG CGCGGGGAAG
  Y
  GAGGGGCGAG CGGGCGCTGC GGCCCGCCCG GGATGGGCCA AGCCCGGCCT GGCGGGGCCG
  AGCGGGAGCC GAGGAAGGCA CGCGGGCCGG GCCTGCGGGC CAGGCGGCCG GGGGGCTGAG
  GTAGAAGTGG GCGCGGAGGA AGGGGCTGGG CGAGGCGGTG GGAGGAGCGG CGAGGGGGCG
  GAGGCTGAGC GGCGAGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382910944	MGP_WTSI_11_32355193	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	T	T	T	T	T	T	T	T	T	C	T	C	C	T	T	C	T	T	C	C	C	C	C	C	C	C	C	C	C	T	T	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240806564					SNP	T	T	C	T	T	T	T	T	T	T	T	T	C	T	C	C	T	T	C	T	T	C	C	C	C	C	C	C	C	C	C	C	T	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382910944	MGP_WTSI_11_32355193	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:32405193 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2704	CpG island 2704	within coordinates
Gm73788	predicted gene, 73788	163 bp upstream
Rr444610	regulatory region 444610	1361 bp distal
Rr444611	regulatory region 444611	174 bp distal
Rr444612	regulatory region 444612	within coordinates
Rr444613	regulatory region 444613	188 bp proximal
Rr444614	regulatory region 444614	347 bp proximal
Tssr100854	transcription start site region 100854	94 bp downstream
Tssr100855	transcription start site region 100855	53 bp downstream
Tssr100856	transcription start site region 100856	169 bp upstream
Ubtd2	ubiquitin domain containing 2	177 bp upstream