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rs240808049 SNP Detail
Summary
  • ID
    rs240808049
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:93350127 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTGTAATATG AGTATTAAAG
AAGTTAATAG CATATATTTA ATGGTCTTGA TGGCATTGTT AGTAGGAATG AAGTGTAAGT
TAATAGGGCA TTACCACTGA TGATGCCTGA TCAAGTTAGT TGGACCTGAA AAGACTCCCC
GCACCATCTT CCAACTTTCA GCAACAGAAA TTTGCCTGTT TCGCAATTAA AATGGCATTG
Y
TGTAAATATC TCAGTTCTTC TTCAAACATG GAATAAGACT TAAATCAGGA GCACTGGCTA
TTTCAAGCAG AAATATCTGT TGAAAATCTT CTTAAATTCC ATTGTACTGA TCACAAGGAT
GAAACCATTC TTATTCATTC ATCTAGAAAG AATTTGTTGT TTTGATCAGC ACACAATTAA
CAAAAATTTC CAACAATAGT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358876286 MGP_WTSI_3_93246742 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240808049 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss358876286 MGP_WTSI_3_93246742 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93350127 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 705 bp proximal
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 254 bp downstream
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr960 transcription start site region 960 607 bp upstream
Tssr961 transcription start site region 961 1183 bp upstream
Tssr30345 transcription start site region 30345 431 bp downstream
Tssr30346 transcription start site region 30346 406 bp downstream
Tssr30347 transcription start site region 30347 631 bp upstream
Tssr30348 transcription start site region 30348 670 bp upstream
Tssr30349 transcription start site region 30349 676 bp upstream
Tssr30350 transcription start site region 30350 718 bp upstream
Tssr30351 transcription start site region 30351 749 bp upstream
Tssr30352 transcription start site region 30352 798 bp upstream
Tssr30353 transcription start site region 30353 810 bp upstream
Tssr30354 transcription start site region 30354 828 bp upstream
Tssr30355 transcription start site region 30355 847 bp upstream
Tssr30356 transcription start site region 30356 860 bp upstream
Tssr30357 transcription start site region 30357 958 bp upstream
Tssr30358 transcription start site region 30358 1073 bp upstream
Tssr30359 transcription start site region 30359 1102 bp upstream
Tssr30360 transcription start site region 30360 1132 bp upstream
Tssr30361 transcription start site region 30361 1457 bp upstream
Tssr30362 transcription start site region 30362 1471 bp upstream
Tssr30363 transcription start site region 30363 1614 bp upstream
Tssr30364 transcription start site region 30364 1685 bp upstream
Tssr30365 transcription start site region 30365 1720 bp upstream
Tssr30366 transcription start site region 30366 1772 bp upstream
Tssr30367 transcription start site region 30367 1816 bp upstream
Tssr30368 transcription start site region 30368 1833 bp upstream
Tssr30369 transcription start site region 30369 1846 bp upstream
Tssr30370 transcription start site region 30370 1853 bp upstream
Tssr30371 transcription start site region 30371 1873 bp upstream
Tssr30372 transcription start site region 30372 1886 bp upstream
Tssr30373 transcription start site region 30373 1937 bp upstream
Tssr30374 transcription start site region 30374 1955 bp upstream
Tssr30375 transcription start site region 30375 1968 bp upstream
Tssr30376 transcription start site region 30376 1994 bp upstream
Tssr34352 transcription start site region 34352 1044 bp downstream
Tssr34353 transcription start site region 34353 1065 bp downstream
Tssr34354 transcription start site region 34354 1075 bp downstream
Tssr34355 transcription start site region 34355 1213 bp downstream
Tssr34356 transcription start site region 34356 1885 bp downstream
Tssr34357 transcription start site region 34357 1930 bp downstream
Tssr34358 transcription start site region 34358 1982 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory