rs240812802 SNP Detail

Summary

• ID
  rs240812802
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:34793043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGCCAAG GAGAAGGCTA
  CCCCGATGAC TGCCTAGGGA AAAGACCTGA GCTAGGCATG GAGTCTGAAG CCCAGACATC
  AATCCCCGTT CCCTAGGTCT GTTCACTCAC CATGCCTTGG CTGCGGGTTG GAGGTGAGCC
  CAGGTCAGCG ACAATGGCTG TGGAGAGGTT AACGTTCCCC TTGCTGATGC CTCCGATCAC
  Y
  CTGGAGGCCA AGAAGGCCTT AAAGCTCCGA GAGGTAGCCC ACACTGCATA GGAGATGGCC
  AAACCTGTCT GCCAATGGGT GGAGGCCAAG TGGCAGGATC GGTCACTTCA GGCCAGGAAG
  CACCCAGAGC AAGGCAGGCA AGCATATAAC CCTCAGACCC GGGCCACTTG TGTCCCTGTA
  CTTTCCTTAG GTGTATTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364502167	MGP_WTSI_5_34978348	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240812802					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364502167	MGP_WTSI_5_34978348	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:34793043 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15757	CpG island 15757	691 bp proximal
Mfsd10	major facilitator superfamily domain containing 10	within coordinates
Rr125078	regulatory region 125078	within coordinates
Rr367819	regulatory region 367819	1102 bp upstream
Tssr50667	transcription start site region 50667	970 bp upstream
Tssr50668	transcription start site region 50668	815 bp upstream
Tssr50669	transcription start site region 50669	766 bp upstream
Tssr50670	transcription start site region 50670	741 bp upstream
Tssr50671	transcription start site region 50671	676 bp upstream
Tssr50672	transcription start site region 50672	790 bp downstream
Tssr50673	transcription start site region 50673	1291 bp downstream
Tssr50674	transcription start site region 50674	1368 bp downstream
Tssr50675	transcription start site region 50675	1408 bp downstream
Tssr50676	transcription start site region 50676	1504 bp downstream