rs240815288 SNP Detail

Summary

• ID
  rs240815288
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:120880790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATGGTTA CCTCTAACAG
  GAAGTTCACC ACCAGAAGGC TCCAAGTTCT CAAGGGGCTT TGGAATAACA TAATTCTACT
  AAGAAATGCA GGGGGAAGTT TGTATTTAAA AATCCCCAAC TATCAGGTTT AAGCAACCCT
  AAGCAACCCT CATGTCTACC TTGAGAATTC TGAGAGCCAT CATGAGAACT TCCTTCCACA
  Y
  CACTTCTCTC CCCTCTGTTC TGCCTACATC TCGACATTGA ATGCATCTGC ATTCATCAAA
  ACTTCATTCC TGTTGATTTC CGGGTGTCCA GTAGTCAACT TAGATGCTCA ACATATCCTC
  AAGACCCCAA CCAAACCAAG GCCTTTCAGG CCAGGCACAG GGAACATTTT CAGTCCTGAT
  TTGGAGGAGA GTGGCAGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384952582	MGP_WTSI_11_120851278	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240815288					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384952582	MGP_WTSI_11_120851278	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:120880790 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4335	CpG island 4335	177 bp proximal
Csnk1d	casein kinase 1, delta	within coordinates
Gm53204	predicted gene, 53204	1479 bp upstream
Gm57327	predicted gene, 57327	1211 bp upstream
Rr403207	regulatory region 403207	1235 bp upstream
Rr461862	regulatory region 461862	1072 bp distal
Rr461863	regulatory region 461863	753 bp distal
Rr461864	regulatory region 461864	within coordinates
Rr461865	regulatory region 461865	943 bp proximal
Rr461866	regulatory region 461866	1095 bp proximal
Rr461867	regulatory region 461867	1118 bp proximal
Rr461868	regulatory region 461868	1222 bp proximal
Rr461869	regulatory region 461869	1356 bp proximal
Rr461870	regulatory region 461870	1471 bp proximal
Tssr106388	transcription start site region 106388	594 bp upstream
Tssr106389	transcription start site region 106389	1418 bp upstream
Tssr106390	transcription start site region 106390	1448 bp upstream
Tssr112430	transcription start site region 112430	1056 bp downstream
Tssr112431	transcription start site region 112431	1075 bp downstream
Tssr112432	transcription start site region 112432	1114 bp downstream
Tssr112433	transcription start site region 112433	1139 bp downstream
Tssr112434	transcription start site region 112434	1296 bp downstream
Tssr112435	transcription start site region 112435	1341 bp downstream