rs240817749 SNP Detail

Summary

• ID
  rs240817749
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18300618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTGTTGG TTCCAGGAGC
  TGAAGATGGC CACCTGACCT TCAGAGAGCC TCCAGGCTCT TCCCCCCTCC CTTGGACCCT
  CCTCTTGTTT ATGCTTATGT TGCCACTACT GAATAAAGTT TTCAGAGCTT GAGCAGTAAG
  ATTGACTTGT GCTCATTCTT ATTGTTTCTT TCCTTCCCAC TCTCTCACTC CCTTGCCCTG
  R
  GTCTCCACTA ACCACTAATT ATCCTTGCAG ATAGGGATAG AATGGCCTGT CACCACAGAC
  TGAGCCATCT AGCTGGACCA TCAAAGTTTG ACTCCTATTT GGATATTCAC TCTGTCAAGG
  TGGGTTCCAT TGGGATTCCA ATGCTAGCCA ATGTGACTGA TTTGAATAGG GGCATCTGAG
  GATTTTCTCT CCCCTCATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370731012	MGP_WTSI_7_19152042	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G	G	G	G	G	A	G	A	A	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G	A	G	A	A	G	G	G	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240817749					SNP	A	A	A	G	G	G	G	G	A	G	A	A	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G	A	G	A	A	G	G	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370731012	MGP_WTSI_7_19152042	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18300618 () rs orientation: forward

Symbol	Name	Function Class
Psg27	pregnancy-specific beta-1-glycoprotein 27	within coordinates
Tssr2095	transcription start site region 2095	856 bp downstream
Tssr64739	transcription start site region 64739	1603 bp downstream
Tssr64740	transcription start site region 64740	1582 bp downstream
Tssr70834	transcription start site region 70834	498 bp downstream
Tssr70835	transcription start site region 70835	594 bp downstream
Tssr70836	transcription start site region 70836	625 bp downstream
Tssr70837	transcription start site region 70837	681 bp downstream
Tssr70838	transcription start site region 70838	825 bp downstream