rs240820659 SNP Detail

Summary

• ID
  rs240820659
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91053416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATTCCAT TGCCCAGATG
  TTGTTATGTT TATTTTGATA TTTAAAGATA TGCATTCGCT AATTCACTGT AATATCTTAA
  AAGGTCATTT TAATATGTTA AAGTTTATTT TAATAATGTT TAATGTGTTC AATTAAAGTT
  ATTTAACTTA TATAGTTGGA AGGTGATAAA TTTTTAAACC TATTTATTCA TTAGTTTCTG
  R
  GGAGAGGGTG AGTTGGGAAC TAGCTACATC CCACCCACAC AGTGAAAGAG ACTGGGGATA
  AGGGGTGGGG GTGGGGACAA ATAGATGCAG TCGGATGGCT TTCATGGAAG GAGTGTGCAT
  GTTCACATCA TTTTTTTGTA AGCACCGAGG AGAGTAGAAC AGCTGTTATT TAGGTTTCAG
  TGTTTGTAAA CTGTATGTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365847534	MGP_WTSI_5_91334583	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240820659					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365847534	MGP_WTSI_5_91334583	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91053416 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Tssr47224	transcription start site region 47224	1848 bp downstream
Tssr47225	transcription start site region 47225	1746 bp downstream
Tssr47226	transcription start site region 47226	1677 bp downstream
Tssr47227	transcription start site region 47227	1483 bp downstream
Tssr47228	transcription start site region 47228	1420 bp downstream
Tssr47229	transcription start site region 47229	1399 bp downstream
Tssr47230	transcription start site region 47230	1374 bp downstream
Tssr47231	transcription start site region 47231	1344 bp downstream
Tssr47232	transcription start site region 47232	1197 bp downstream
Tssr47233	transcription start site region 47233	1147 bp downstream
Tssr47234	transcription start site region 47234	1112 bp downstream
Tssr47235	transcription start site region 47235	354 bp downstream
Tssr47236	transcription start site region 47236	315 bp downstream
Tssr47237	transcription start site region 47237	295 bp downstream
Tssr47238	transcription start site region 47238	236 bp downstream
Tssr47239	transcription start site region 47239	231 bp downstream
Tssr47240	transcription start site region 47240	212 bp downstream
Tssr47241	transcription start site region 47241	183 bp downstream
Tssr47242	transcription start site region 47242	158 bp downstream
Tssr47243	transcription start site region 47243	140 bp downstream
Tssr47244	transcription start site region 47244	101 bp downstream
Tssr47245	transcription start site region 47245	84 bp downstream
Tssr47246	transcription start site region 47246	30 bp downstream
Tssr47247	transcription start site region 47247	2 bp upstream
Tssr47248	transcription start site region 47248	65 bp upstream
Tssr47249	transcription start site region 47249	135 bp upstream
Tssr47250	transcription start site region 47250	273 bp upstream
Tssr47251	transcription start site region 47251	337 bp upstream
Tssr47252	transcription start site region 47252	389 bp upstream
Tssr51812	transcription start site region 51812	1330 bp upstream
Tssr51813	transcription start site region 51813	1313 bp upstream
Tssr51814	transcription start site region 51814	339 bp upstream
Tssr51815	transcription start site region 51815	293 bp upstream
Tssr51816	transcription start site region 51816	260 bp upstream