rs240822118 SNP Detail

Summary

• ID
  rs240822118
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66903689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTTGCATTC TTGCTAAGGC TAACTGGAGG
  CACGTTTGTT TAAGATCCTG TTCATCTGGT TTATCATGAA GTTATTGTTT CCTTTTATAA
  AATAAAAACA AACAAGTAgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
  R
  tACACTTATT CCTGGGGATC GGACTCAGGC CTTACACATA CATATAAGAA ACAAGCTTGT
  AAGTGTAGGA TCAGCTGTAT TCTAATGATA TGAAAGGTTG AACAATAACC AGGATTTCAC
  AAACCCCTTT GAGCCATATT TCTCTTGTAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319758755	CHEV_1_66911104	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240822118					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66903689 () rs orientation: forward

Symbol	Name	Function Class
Acadl	acyl-Coenzyme A dehydrogenase, long-chain	1253 bp upstream
Cpgi339	CpG island 339	791 bp distal
Rr412478	regulatory region 412478	1264 bp distal
Rr412479	regulatory region 412479	763 bp distal
Rr412480	regulatory region 412480	1202 bp proximal
Tssr12011	transcription start site region 12011	1271 bp upstream
Tssr12012	transcription start site region 12012	1245 bp upstream
Tssr12013	transcription start site region 12013	1233 bp upstream
Tssr12014	transcription start site region 12014	1215 bp upstream
Tssr12015	transcription start site region 12015	1195 bp upstream
Tssr12016	transcription start site region 12016	1180 bp upstream