rs240824339 SNP Detail

Summary

• ID
  rs240824339
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:136192202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGTATTG TTTTGTTTGT
  TTAAAAAAAA AAAAGAAAAA CCTTAGAACT GTGTGCATGT GTGTGTTTGT GTCCTGATTC
  GTGTGTGTAC ACGTGAATAT GTTTGGTACA TGGGCAGACA AAAGCCAGAG GCGGATACTG
  TATCTTTCTC AATCAGACTC CGATTGATAA CTGAGAAAGG ATTACCCCTT GAATCCTGAC
  K
  TCGACAACTT GGCTAAACTG GCTCTCTGTC CAGTCCCAGG GGTCCTCCTG CTTCCACCTC
  CTGAGCACAG GGGTTACAGA TGCACAGCTG TTCACGGACG CTGGGAACTG AACTCAGGCC
  TTCCCACATG GCAGGCACTT TATGGCTGAC CCATCTCCCC AGCCCTGTGT TCTGAGATAA
  TGGCTTGCTC TGGGCTAGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366851436	MGP_WTSI_5_136639218	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240824339					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366851436	MGP_WTSI_5_136639218	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136192202 () rs orientation: forward

Symbol	Name	Function Class
D5Mit341	DNA segment, Chr 5, Massachusetts Institute of Technology 341	1428 bp distal
Orai2	ORAI calcium release-activated calcium modulator 2	Intron
Rr622551	regulatory region 622551	558 bp proximal
Tssr53797	transcription start site region 53797	1988 bp upstream
Tssr53798	transcription start site region 53798	1956 bp upstream
Tssr53799	transcription start site region 53799	1941 bp upstream
Tssr53800	transcription start site region 53800	1887 bp upstream
Tssr53801	transcription start site region 53801	1315 bp upstream
Tssr53802	transcription start site region 53802	1277 bp upstream
Tssr53803	transcription start site region 53803	1694 bp downstream
Tssr53804	transcription start site region 53804	1741 bp downstream
Tssr53805	transcription start site region 53805	1879 bp downstream
Tssr53806	transcription start site region 53806	1894 bp downstream