rs240827155 SNP Detail

Summary

• ID
  rs240827155
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:162896449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTATCTAA GATTCACACA
  GAGCCAGGCC TCGCGCCTCA TTGAATCCCT AAGGTAGGTG TATCTGGACA CAGTAGATTG
  CCAACTAACA GAGCATCTGC CCGCTTGCAC ATTCGGTTTC TGCCCTCCGG TAAACCACTC
  CCCTCTTCCC CATGCTTGGG CTCCGCCCCT ACAGTAGGCC CCTCCTAGGG TTCTGGCGCG
  S
  GGGCTCCGCC CCTCGTGTCT TGTACGCTTC GCCCCTTCCG TATGCTCCGC CCCTGCGCTC
  GCGCGCCAGG GCCGGGCGGC GCCGACGCAC TTGGCGGGAG ATAGGAAAGT GGTTCTGTGC
  GCTCCCTAGG CAGCTGCAGT TCCTGGGAAC GTGCGACCAG ACCTGCAGAC ACGCTGACGC
  CTGAGAGCAC CGCCTGGGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss356397374	MGP_WTSI_2_162880265	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs240827155					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356397374	MGP_WTSI_2_162880265	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162896449 () rs orientation: forward

Symbol	Name	Function Class
Gm75254	predicted gene, 75254	115 bp upstream
Mybl2	Myb proto-oncogene like 2	mRNA-UTR
Rr374192	regulatory region 374192	1271 bp downstream
Rr397459	regulatory region 397459	within coordinates
Rr569271	regulatory region 569271	126 bp distal
Rr569272	regulatory region 569272	within coordinates
Rr569273	regulatory region 569273	169 bp proximal
Tssr21431	transcription start site region 21431	41 bp upstream
Tssr21432	transcription start site region 21432	62 bp upstream
Tssr21433	transcription start site region 21433	122 bp upstream
Tssr21434	transcription start site region 21434	153 bp upstream
Tssr27277	transcription start site region 27277	109 bp upstream
Tssr27278	transcription start site region 27278	75 bp upstream