rs240833521 SNP Detail

Summary

• ID
  rs240833521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:36059229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCACCCTTC CTCGCTATTC
  CCTGACACTT CTTAGGGTCC AGGTCCCCCA GTTGTAGGTA CTCCTTGCAG CCTTTTCTTA
  CTCTGGCCTG ATCAGGTGCC AAGGGCAAGC GAGGCTGACA GGGCGACCTC CCAGGCTCCT
  CCCGCGTGTC CCGAGCCACT CAGCAGCTCT GCCATTCCGC GCGCCAGTAC TGGGCGCCCG
  Y
  CTTGGCCCGC CCCTTACGCC GGCAGCTCAC CGCCTGGCTG CCGCTATATA AGTCGGCCAT
  TTGCTTTGCT CCGCCCCAGA GCCCGGGAGT CAAAGCCGGT TGTCAACCCA GCCCTGTCCC
  GCACTCGCCT GCCTCTTCTT TTTTTGCTTT CAACATGACA GATGCCGCTG TGTCCTTCGC
  CAAGGACTTC TTGGCCGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403267843	MGP_WTSI_X_34335571	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs240833521					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403267843	MGP_WTSI_X_34335571	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:36059229 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22665	CpG island 22665	41 bp proximal
Rr690675	regulatory region 690675	734 bp distal
Rr690676	regulatory region 690676	688 bp distal
Rr690677	regulatory region 690677	within coordinates
Rr690678	regulatory region 690678	86 bp proximal
Rr690679	regulatory region 690679	716 bp proximal
Rr690680	regulatory region 690680	809 bp proximal
Rr690681	regulatory region 690681	1020 bp proximal
Rr690682	regulatory region 690682	1100 bp proximal
Slc25a5	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	75 bp upstream
Tssr5608	transcription start site region 5608	144 bp upstream
Tssr160750	transcription start site region 160750	18 bp upstream
Tssr160751	transcription start site region 160751	45 bp upstream
Tssr160752	transcription start site region 160752	66 bp upstream