rs240840210 SNP Detail

Summary

• ID
  rs240840210
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85434812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCAAAAT GGGGTGGCAG
  AACACCCTCT ATTCTGGACT CAGGCTGAAT TCAGTTAGCT CTAAGAAGCA TCCCTTACCT
  ACCCGGGAAC GCCCTAGCCT GGTCCAGAGC AGCTGGGGCC AGAAGCCTGA GCAGAGGCTC
  CCAGGAAGGG CAAGAGAGGT TGGGGAGTGG GGGGTGGGGT GAGGGAAAGA GACGAAGTCC
  R
  GAGGGGAGCT CGAATGTCTA CTATTGTTAC GAGCTGTTCC TCTGGGCTCC TTGGGAAGCT
  TAAGTCCAGC GGAGGGTGGG GTCCCCAGGA ACTGCCAGGG TGGCCGGCCA GTGAGCTGGC
  TGCTCCTTCC TGGGAAGGCC AGGCTGAGTA GGAGGAAGGC AGTCTTGTTG CATCCTTTCT
  TTCTGTTTGT CCTCTGCTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375404581	MGP_WTSI_8_87232082	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240840210					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375404581	MGP_WTSI_8_87232082	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85434812 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20710	CpG island 20710	980 bp distal
Nfix	nuclear factor I/X	within coordinates
Rr178192	regulatory region 178192	789 bp proximal
Rr187001	regulatory region 187001	within coordinates
Rr187002	regulatory region 187002	588 bp proximal
Tssr78440	transcription start site region 78440	442 bp upstream
Tssr82123	transcription start site region 82123	1974 bp upstream
Tssr82124	transcription start site region 82124	1929 bp upstream
Tssr82125	transcription start site region 82125	1855 bp upstream
Tssr82126	transcription start site region 82126	1667 bp upstream
Tssr82127	transcription start site region 82127	322 bp downstream