rs240845565 SNP Detail

Summary

• ID
  rs240845565
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108882358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCATAGG AATTACAACT
  ATCTTGATAG AATTTATAGG GTTTAAACTG ACCTCAAGTC CTGTCTCTTA AATATAAAAT
  TTAAAAACAG AGCCCAGACC TATTGAGCAC CCCCAACTTA GATATGTACG CTGGAGTACT
  AAAATCACCC TCAGATGTGT CCAGTACGGT TTTTCTCCGG GTGCTTCAGA AGCGCAAGCA
  R
  ACCTTTCGTT CTGGGTGCTG AGGCAGGCCA GGTCTTCACT GCCCCGCCCT CCATCCGTTC
  ACATGCTCCC CCAGTGGGTG AGTAGGTGGG AAAGGATGGT ACAGGATGCT TTAAGAATGA
  GTCAGCTCTG CCTCCCTCCT CGCAGATGAA CTTCACTTTG AAAACAGGCT CTGTGTTTTT
  CTTACATGCT TGACTAACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320867125	CHEV_3_108777960	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240845565					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108882358 () rs orientation: forward

Symbol	Name	Function Class
Eeig2	EEIG family member 2	mRNA-UTR
Gm65815	predicted gene, 65815	within coordinates
Rr583360	regulatory region 583360	432 bp distal
Tssr35212	transcription start site region 35212	1742 bp upstream
Tssr35213	transcription start site region 35213	1449 bp downstream
Tssr35214	transcription start site region 35214	1508 bp downstream
Tssr35215	transcription start site region 35215	1525 bp downstream
Tssr35216	transcription start site region 35216	1651 bp downstream