rs240853389 SNP Detail

Summary

• ID
  rs240853389
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92285669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGACAGCT TGCAGTCCGT
  CCCGCTCTCG GCGACAAAAC ACCTACCAGC CGATGCTCCT AGTCTAATCA GAGCCTCGGG
  AGCCGACTGG GCAGGGCTGC GACCACGTGG GTGACCGCGG CCAGCAGCAG CAAGCAGCGC
  AAGGAGGAGG AGGGGGCGTG CCCAAGTGGT GGGAGGCCTG CTGGTAGGCG TGGCCTGTGG
  K
  GCCGGGCAGG TGGGCGTGGC CTGCGGCCCG GGGCTCCCTC CTCTCCCCTT TTGCCTTCGC
  CCTTCGAGCC GCCACGTAAC GCCACGTCCC CGCGCATGCG CACCGCGGCT GGTGTCCGCG
  GCTGTTTCCG GGCTCGGGGG GCCGGAGAGG CTGCTGAGTA GGAGGCGGCG GTGGCGGAGG
  CCGGGGAGTG CGGAGAGCCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365876668	MGP_WTSI_5_92566836	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240853389					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365876668	MGP_WTSI_5_92566836	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92285669 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16052	CpG island 16052	within coordinates
Gm71614	predicted gene, 71614	85 bp upstream
Rr399160	regulatory region 399160	within coordinates
Rr614570	regulatory region 614570	96 bp distal
Rr614571	regulatory region 614571	411 bp distal
Rr614572	regulatory region 614572	within coordinates
Rr614573	regulatory region 614573	147 bp proximal
Tssr47284	transcription start site region 47284	39 bp upstream
Tssr47285	transcription start site region 47285	86 bp upstream
Tssr47286	transcription start site region 47286	130 bp upstream
Tssr51846	transcription start site region 51846	108 bp upstream
Tssr51847	transcription start site region 51847	48 bp upstream
Tssr51848	transcription start site region 51848	24 bp upstream
Uso1	USO1 vesicle docking factor	128 bp upstream