rs240857504 SNP Detail

Summary

• ID
  rs240857504
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74564132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGTTTTAA CCAACAGATA ATGATTCCAA
  GCTACTTCTC TTTGCTCTCC GCCTTCCCCA CCCCAAGCTC AGCTGCTGGT CGCCCCAGCG
  AGCAGCTTCT CTTTGCTTCC TCTTTAGTTT TGTATTTGTA AAtttttctt tttctttttt
  Y
  ttttcttttt tttttttttt gttttGACTA TCTAACAAAA CAAAAAGAAG TCCTCCACCT
  CCCAAGTCGG AGCAGCGCAG GCAAAGAGAA GCCTCCAAGG AAGAGGAGGC TGCGGCCAGC
  TGCAAAAGCC ATAGGGTCTC TTGCTCCCAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320348131	CHEV_2_74571845	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240857504					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74564132 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11807	CpG island 11807	274 bp distal
Cpgi11808	CpG island 11808	1624 bp proximal
Gm28230	predicted gene 28230	within coordinates
Hoxd3	homeobox D3	within coordinates
Igs15	intergenic site 15	within coordinates
Rr57049	regulatory region 57049	within coordinates
Rr373366	regulatory region 373366	1938 bp downstream