rs240861257 SNP Detail

Summary

• ID
  rs240861257
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130549203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAGAACTTT CTTTATGCCC TCTGACCCCT
  CCATACTTAG GAGCCTTGCT TTCTTGGGGG TCACCCCAGT TGACCCTGTG GGACCTTTCT
  TCCTAGGTGC TAATCTCCGA CCTGTCTTCT GGCCTGACCT TTAACCCAGC CTTTACCCAA
  R
  ACCTTGAAGG CTTTACCCTG GTGGGACTTG GGATCCAACT GGCTCTCCTA TCGAGGTTCC
  CATCTCCTCT TGGAGACAGC GGGTGGTGGT CTGGCAGTGT GGGGGAGGGG CCTTCCCTTC
  CTAATAGTTT TGAGGAAGTG AGGCACCTGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318860	CHEV_4_130377807	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240861257					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130549203 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39279	transcription start site region 39279	288 bp upstream
Tssr39280	transcription start site region 39280	764 bp upstream
Tssr39281	transcription start site region 39281	830 bp upstream
Tssr39282	transcription start site region 39282	1150 bp upstream
Tssr39283	transcription start site region 39283	1220 bp upstream
Tssr39284	transcription start site region 39284	1421 bp upstream
Tssr39285	transcription start site region 39285	1491 bp upstream
Tssr39286	transcription start site region 39286	1558 bp upstream
Tssr39287	transcription start site region 39287	1584 bp upstream
Tssr39288	transcription start site region 39288	1619 bp upstream
Tssr39289	transcription start site region 39289	1748 bp upstream
Tssr39290	transcription start site region 39290	1755 bp upstream
Tssr39291	transcription start site region 39291	1903 bp upstream
Tssr39292	transcription start site region 39292	1980 bp upstream