rs240870354 SNP Detail

Summary

• ID
  rs240870354
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:9882774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGAAAG AAAAATCTTT
  GCGGGATAGT TTAGCAAAAG AAAGGAAGGG AAAGAAGAAA AAGAAAAGAA TGAGGGCGAT
  CCCCCCCCCC AAAAAAAAAG CAGACACGGA GGAATAAAGG GGTCAAAAAA AAAAAAAAAA
  AAAGGAGGGA GAGAGGAATC CGAGTGTGAC CACACTGCAC ACTGATTCCT TGGCGCTCAG
  R
  GACGGTTGCT CTTCCGATCA CCTGCAAGGG AGAGAAAGAG AGACCTGAAT GAGGTGTAAG
  AACTTTTAAC ACCTGAAATT CTGGAGGGCA CTAGGTCTTC GCAAGCTTCC TGCAGGGCCG
  ACTCACCCGG GACGTGCACA CGCACGCGAA GACCCGGAGG GAAAGAAGCC AAGCTCCGCA
  GCACACCTCC GACAGCCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353056025	MGP_WTSI_2_9799590	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240870354					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353056025	MGP_WTSI_2_9799590	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:9882774 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11183	CpG island 11183			245 bp distal
Cpgi11184	CpG island 11184			99 bp proximal
Gata3	GATA binding protein 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Gm13256	predicted gene 13256			within coordinates
Rr551592	regulatory region 551592			697 bp distal
Rr551593	regulatory region 551593			627 bp proximal
Rr551594	regulatory region 551594			1796 bp proximal
Tssr16061	transcription start site region 16061			1826 bp downstream
Tssr16062	transcription start site region 16062			1784 bp upstream
Tssr22554	transcription start site region 22554			504 bp upstream
Tssr22555	transcription start site region 22555			113 bp upstream
Tssr22556	transcription start site region 22556			76 bp upstream
Tssr22557	transcription start site region 22557			23 bp downstream
Tssr22558	transcription start site region 22558			192 bp downstream
Tssr22559	transcription start site region 22559			397 bp downstream
Tssr22560	transcription start site region 22560			475 bp downstream
Tssr22561	transcription start site region 22561			504 bp downstream
Tssr22562	transcription start site region 22562			617 bp downstream
Tssr22563	transcription start site region 22563			1574 bp downstream
Tssr22564	transcription start site region 22564			1600 bp downstream
Tssr22565	transcription start site region 22565			1626 bp downstream