rs240870535 SNP Detail

Summary

• ID
  rs240870535
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129269865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCA CTGTGGTGTG CCAGTAATGT
  Y
  GGCTAACCCC AGGGTCTTGG GAGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312491	CHEV_4_129053316	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240870535					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129269865 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14890	CpG island 14890	757 bp proximal
Rr377176	regulatory region 377176	245 bp downstream
Rr600214	regulatory region 600214	1394 bp distal
Rr600215	regulatory region 600215	698 bp proximal
Rr600216	regulatory region 600216	1488 bp proximal
Tssr39144	transcription start site region 39144	726 bp downstream
Tssr43495	transcription start site region 43495	1745 bp upstream
Tssr43496	transcription start site region 43496	46 bp upstream
Tssr43497	transcription start site region 43497	1754 bp downstream
Tssr43498	transcription start site region 43498	1775 bp downstream
Tssr43499	transcription start site region 43499	1861 bp downstream
Zbtb8a	zinc finger and BTB domain containing 8a	Intron